rs27178283 SNP Detail

Summary

• ID
  rs27178283
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:33357532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAG ATGCTGGCCT GGTTAAACAG
  R
  GCAGCTCCAA ACAGCCCTGG AGGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss37397602	NES08760535	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	G	A				G	G		G
ss45357956	mCV25346393	ABI	CRAMUS_MOUSE	f	SNP		A	G					A	G
ss146405539	ENSMUSSNP6727291	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
ss320222525	CHEV_2_33323040	CHEVERUD	SCREENING_POP	f	SNP										G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs27178283					SNP	A	A	G	G	A	G	A	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37397602	NES08760535	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:33357532 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11539	CpG island 11539	78 bp proximal
Gm75558	predicted gene, 75558	541 bp upstream
Rr373021	regulatory region 373021	549 bp upstream
Tssr17390	transcription start site region 17390	567 bp upstream
Tssr23602	transcription start site region 23602	973 bp downstream
Zbtb43	zinc finger and BTB domain containing 43	within coordinates