rs27178285 SNP Detail

Summary

• ID
  rs27178285
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:33355639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGACCGTCT GCCACAGTTC
  TCCTCCTCCC CTCTCCATCA CTAAGGGACC GTCTGCCACA GTTCTCCTCC TCTCTACATC
  ACCAAGGGAC TGTCTGCCAC AGTTCTCATG CTCTCCTCAG ACCCTGCCAC ACTAGTGTCT
  ACATTATCTG TGCAGTTCAT GGCTCTTCTA GAACATGTTA CCCCAAAGAA TAATCTGCCT
  Y
  GGTGCTTCTC CCTCTCGATC TCCAAACCTT TCATAATGGC ATGGAAACCC TGGAGAAAGC
  TCCCTGAAGT AGGTTGCTTC CGGGGACGGC CTCCATTTCC CACCGGTTCT CCCAGTGGTC
  CATCCATTTT TTGCCCCTTT CCCCAAAACC TCAACACTGG GCCAGAGTGC TCTGGTCAGG
  CCCTGCTGCC TTTAAAGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37397604	NES08760544	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27178285					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37397604	NES08760544	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:33355639 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11539	CpG island 11539	1971 bp proximal
Zbtb43	zinc finger and BTB domain containing 43	within coordinates