rs27179909 SNP Detail

Summary

• ID
  rs27179909
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:29995967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCAAGAC AGGCTTTTTT
  TGTGTATCCC TGGCTGTCCT GCTGTCCTGG AATTCACAAA GATCTGCTTG TAACAAGTGC
  CTTTAACTTG AGCACTGAGC CATCAACCCA GCCCTACATT CTTCTTTATT AAGTATTGTC
  ACTCTCCATG CTTTATCGAA TACACTGTTT AGAGGGTATG GCCCCTTAGG CAACACCTTG
  M
  TTTTCCCTTT ATCATACAAC ACACACGCAC ACAGTTTTAC AATGCTGGGA GCCGAGCCCC
  GGACCCCATG CTCTGTACAT GCTAGGCAAA TACTCCAACA TTGACTTACA CCCCGGCCCC
  AAATACTGTA ATTTGAGAAA GCTTATTTTG CTTTTTTTTT TCTTGTTTGA AATAGGCTTT
  CTTTGTGTAG CCCTGGCTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37405431	NES08751034	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27179909					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37405431	NES08751034	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29995967 () rs orientation: forward

Symbol	Name	Function Class
Rr554218	regulatory region 554218	499 bp proximal
Rr554219	regulatory region 554219	589 bp proximal
Zer1	zyg-11 related, cell cycle regulator	Intron