rs27179932 SNP Detail

Summary

• ID
  rs27179932
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29984390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTCTTAGA CAGGTATTTG
  TCTCCCCTGC TACCACCACG GCCCAACCAG ACTGACTTTC TCTCCTTGTG TTCCTTGAAC
  CTCCCCCATT CAGCTGACTT CCACCTGATG ACCCTCTTCT AGCCCAAAGC CCAGTGTGCA
  TGCTCTTGGG ATTTGTTTTG GTCAAATAGA CATCCCTTTT TCTGAAGAAC TGACTTCCTA
  W
  GGCCAGGGTG GTTATGGAAG GATTGGTTGT CCATCGTGTG TGCGCGCGCA CGCACCCGCG
  CGAGTGTGTA TTGGGGGACG GGGGGACGGG GGGCGGTTAG GGCCAATCAT ACTATTCCAT
  ATGAGATTAA ACAGAGGCTG GGGATTAACA CAATTGGTAG ACTGTCTAGC AAGCACTAAA
  GGCTGGGTTA TCGCCCCAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37405454	NES08751258	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27179932					SNP	T	T	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37405454	NES08751258	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29984390 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11425	CpG island 11425	291 bp distal
Rr396857	regulatory region 396857	524 bp downstream
Tssr23344	transcription start site region 23344	834 bp upstream
Tssr23345	transcription start site region 23345	775 bp upstream
Tssr23346	transcription start site region 23346	737 bp upstream
Tssr23347	transcription start site region 23347	699 bp upstream
Zdhhc12	zinc finger, DHHC domain containing 12	743 bp upstream