rs27179933 SNP Detail

Summary

• ID
  rs27179933
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29984374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGGTAATA GTACCCGCGT
  CTTAGACAGG TATTTGTCTC CCCTGCTACC ACCACGGCCC AACCAGACTG ACTTTCTCTC
  CTTGTGTTCC TTGAACCTCC CCCATTCAGC TGACTTCCAC CTGATGACCC TCTTCTAGCC
  CAAAGCCCAG TGTGCATGCT CTTGGGATTT GTTTTGGTCA AATAGACATC CCTTTTTCTG
  W
  AGAACTGACT TCCTATGGCC AGGGTGGTTA TGGAAGGATT GGTTGTCCAT CGTGTGTGCG
  CGCGCACGCA CCCGCGCGAG TGTGTATTGG GGGACGGGGG GACGGGGGGC GGTTAGGGCC
  AATCATACTA TTCCATATGA GATTAAACAG AGGCTGGGGA TTAACACAAT TGGTAGACTG
  TCTAGCAAGC ACTAAAGGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37405455	NES08751256	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27179933					SNP	A	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37405455	NES08751256	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29984374 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11425	CpG island 11425	275 bp distal
Rr396857	regulatory region 396857	508 bp downstream
Tssr23344	transcription start site region 23344	818 bp upstream
Tssr23345	transcription start site region 23345	759 bp upstream
Tssr23346	transcription start site region 23346	721 bp upstream
Tssr23347	transcription start site region 23347	683 bp upstream
Zdhhc12	zinc finger, DHHC domain containing 12	727 bp upstream