rs27179934 SNP Detail

Summary

• ID
  rs27179934
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29984318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCTCGAG GCAAGTTACT
  GAGCTTCTTT AGGCTACTTT CTGCCTCTTC AATGGGGTTG GTAATAGTAC CCGCGTCTTA
  GACAGGTATT TGTCTCCCCT GCTACCACCA CGGCCCAACC AGACTGACTT TCTCTCCTTG
  TGTTCCTTGA ACCTCCCCCA TTCAGCTGAC TTCCACCTGA TGACCCTCTT CTAGCCCAAA
  S
  CCCAGTGTGC ATGCTCTTGG GATTTGTTTT GGTCAAATAG ACATCCCTTT TTCTGAAGAA
  CTGACTTCCT ATGGCCAGGG TGGTTATGGA AGGATTGGTT GTCCATCGTG TGTGCGCGCG
  CACGCACCCG CGCGAGTGTG TATTGGGGGA CGGGGGGACG GGGGGCGGTT AGGGCCAATC
  ATACTATTCC ATATGAGATT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37405456	NES08751254	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	G	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27179934					SNP	G	G	C	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37405456	NES08751254	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29984318 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11425	CpG island 11425	219 bp distal
Rr396857	regulatory region 396857	452 bp downstream
Rr554214	regulatory region 554214	168 bp distal
Rr554215	regulatory region 554215	1558 bp proximal
Rr554216	regulatory region 554216	1753 bp proximal
Tssr23344	transcription start site region 23344	762 bp upstream
Tssr23345	transcription start site region 23345	703 bp upstream
Tssr23346	transcription start site region 23346	665 bp upstream
Tssr23347	transcription start site region 23347	627 bp upstream
Zdhhc12	zinc finger, DHHC domain containing 12	671 bp upstream