rs27179936 SNP Detail

Summary

• ID
  rs27179936
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29983925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGCTGTC TATTGGGTGC
  CACCGGCGGC CCCTCAGGCC AACAGGTGCC CGAGGAGGCT GAAGGCGGGG CCCGCGCGCG
  CACAGCCTAC AACTCCCTAA CTCCGCCTCC TGTGGGCCAG GTAACTTTGC AAAACCCGGG
  AGGCGGAAGC CTCCGAAGAC AACCCCACCC CCGCATGCGC ATGCGTGCCC ATCTTTGATC
  Y
  CCGGAGGCCA CGCGGAGCTT GCTCCCAAGG GGCGATGGGC CGGGCTTGCA GGAGGGCACG
  CCTTGATGAC ACACTTTCCT CTTATTCGTT TTCTGATTTT GCAAACGGAT GATGGGAAAA
  AGGAGGGTTC TGGTGCGGAG TCTGGACACG CATGGCCCAG CTTGGAGTCA GAGAAATAAT
  TGTCCGGCCT ATGACTCTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37405458	NES08751271	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27179936					SNP	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37405458	NES08751271	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29983925 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11425	CpG island 11425	within coordinates
Rr396857	regulatory region 396857	59 bp downstream
Tssr23344	transcription start site region 23344	369 bp upstream
Tssr23345	transcription start site region 23345	310 bp upstream
Tssr23346	transcription start site region 23346	272 bp upstream
Tssr23347	transcription start site region 23347	234 bp upstream
Zdhhc12	zinc finger, DHHC domain containing 12	278 bp upstream