rs27179937 SNP Detail

Summary

• ID
  rs27179937
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29983514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTAATTAG GGTCCAACTT
  GGGAATCAGG CGGAGAGAGG ATGATCCCCG GACCGACATA GGAGAAAGAC GCTTGAGGAA
  CTGGTGGGAG ATAGAAATGG AGATTTCAAT GTGTCTGAGG ATTAGGGGGA CCCCGGTATA
  CCCACGCGTG ATCGGGTGGG CTCGGGGTGG CGCGGTGTCC GGCTCACCGG TGTCGTGCAG
  R
  AAGAGCACCA GAGTGATTCC CCAGGTCAGC ACGGTGTGCC CAGTCCGCAC CAGCATCCCA
  GAGTTAAGCG GCGGCCAAAG AGCCATGGCC TTGGCCCCCG CCCGAGCCCA CCCGGAAGAA
  GCGCGCAGAA GGTGGGGCCG CGGGGCAGCG GGGCTGCAGC AACGCGGGGA TTGGTGGCTC
  TGCATTAGAG GCGGGGCACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37405459	NES08751269	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27179937					SNP	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37405459	NES08751269	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29983514 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11425	CpG island 11425	within coordinates
Rr396857	regulatory region 396857	51 bp upstream
Tssr23344	transcription start site region 23344	31 bp downstream
Tssr23345	transcription start site region 23345	59 bp downstream
Tssr23346	transcription start site region 23346	105 bp downstream
Tssr23347	transcription start site region 23347	140 bp downstream
Zdhhc12	zinc finger, DHHC domain containing 12	within coordinates