rs27179938 SNP Detail

Summary

• ID
  rs27179938
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29983155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCCTCTG GTGGGCTCTG
  TTCCTTCTGG AAGGGAAACC TAGGAGGGGG CAGGAAGGGG GTGAAGGGAA TGATGGGGAA
  AGGAGATGCT ACCAGGCGAA GGTGGGAAAC CTGCTCCTCG CTATAGTGGC GTCCCTTGGG
  GTAGTTAGTC GGCTCATAGG ATTTGGGGAG TGGACCGGAA AGCCAAGTCC TTAAGTCTAG
  M
  GGATTTCTTA ATCTTATTTA GGGAGGGGTT GGGAGGCAAT TTCTGGGAAG GACAGGTAGA
  GCCCAGGGAT GGGAGAGATG GGGCCTCTAG TTGGTCCTCT GATGGGCTCT GGTGGTCTTT
  GGATGGATGG ACATCTATCG ATGACAGAAA ATTACTGGGA TTAATTAGGG TCCAACTTGG
  GAATCAGGCG GAGAGAGGAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37405460	NES08751299	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27179938					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37405460	NES08751299	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29983155 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11425	CpG island 11425	156 bp proximal
Rr396857	regulatory region 396857	410 bp upstream
Tssr23344	transcription start site region 23344	390 bp downstream
Tssr23345	transcription start site region 23345	418 bp downstream
Tssr23346	transcription start site region 23346	464 bp downstream
Tssr23347	transcription start site region 23347	499 bp downstream
Zdhhc12	zinc finger, DHHC domain containing 12	within coordinates