rs27179941 SNP Detail

Summary

• ID
  rs27179941
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29982898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGAAGAG GGTGGAGCCA
  GCCAGGAGCT CCAGCTAGGA AGGTGCCAGC CAGCCTGTTT AAGCCCATGG CAGTGAAGGA
  GGATTATGGA GAGGAGGGAG GGCTAAGAAG TGATGGACGT GGTGACACCA GACAGCTGAG
  CGTAGGCAAC TCTGGTACCC TTGGGTGAAA GAGAGCCAAG GAGGTTTTGA AGGTGGCTGA
  Y
  TCCTGGTGTG GAAGCCTGAG GACAAAGGGC AAAAGCGATG GAGGAGGGCT ACAGAGGAAG
  CCTCTGGTGG GCTCTGTTCC TTCTGGAAGG GAAACCTAGG AGGGGGCAGG AAGGGGGTGA
  AGGGAATGAT GGGGAAAGGA GATGCTACCA GGCGAAGGTG GGAAACCTGC TCCTCGCTAT
  AGTGGCGTCC CTTGGGGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37405463	NES08751296	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27179941					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37405463	NES08751296	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29982898 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11425	CpG island 11425	413 bp proximal
Pkn3	protein kinase N3	1864 bp downstream
Rr396857	regulatory region 396857	667 bp upstream
Tssr23344	transcription start site region 23344	647 bp downstream
Tssr23345	transcription start site region 23345	675 bp downstream
Tssr23346	transcription start site region 23346	721 bp downstream
Tssr23347	transcription start site region 23347	756 bp downstream
Zdhhc12	zinc finger, DHHC domain containing 12	within coordinates