rs27179942 SNP Detail

Summary

• ID
  rs27179942
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29982827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGGAGGT GATATGGAGG
  CTAGACCTGA GGGAGGCAGG AGGAAGGGGG CTCCCCAGGG GAAGAGTCAG CCCTGGAAGA
  GGGTGGAGCC AGCCAGGAGC TCCAGCTAGG AAGGTGCCAG CCAGCCTGTT TAAGCCCATG
  GCAGTGAAGG AGGATTATGG AGAGGAGGGA GGGCTAAGAA GTGATGGACG TGGTGACACC
  W
  GACAGCTGAG CGTAGGCAAC TCTGGTACCC TTGGGTGAAA GAGAGCCAAG GAGGTTTTGA
  AGGTGGCTGA CTCCTGGTGT GGAAGCCTGA GGACAAAGGG CAAAAGCGAT GGAGGAGGGC
  TACAGAGGAA GCCTCTGGTG GGCTCTGTTC CTTCTGGAAG GGAAACCTAG GAGGGGGCAG
  GAAGGGGGTG AAGGGAATGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37405464	NES08751295	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27179942					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37405464	NES08751295	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29982827 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11425	CpG island 11425	484 bp proximal
Pkn3	protein kinase N3	1793 bp downstream
Rr396857	regulatory region 396857	738 bp upstream
Rr554214	regulatory region 554214	810 bp proximal
Tssr23344	transcription start site region 23344	718 bp downstream
Tssr23345	transcription start site region 23345	746 bp downstream
Tssr23346	transcription start site region 23346	792 bp downstream
Tssr23347	transcription start site region 23347	827 bp downstream
Zdhhc12	zinc finger, DHHC domain containing 12	within coordinates