rs27179967 SNP Detail

Summary

• ID
  rs27179967
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29968818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTAAGAGC TTTGTTTGCT
  CAGGCCTTTG GCTCTGGCCC TCCTGCTTGG GGCAGCCAAA GGATTTCCTG AGCCTCGCCC
  TTGCCCTCTG ACAGTTAAGG CAGGACGATC AACCTAGCTG AGGCCTGGGG CCCCTAAACA
  GAGTAGCCAT TCTTTCATGG GGCTTAGGAG ATGGAACACC GAAAGGTAAG GATAAAATAG
  Y
  GTGGCTTCCA GGATCCTGGG GATAGGAAGG GGGTCAGCAG GAGTTGCTCT GGAATAAGGT
  CAGCCTCCGA GAAGTTTTCT CTCCCTGCCT TTGATGGTGC CTCTAATCTG GTGAACAGCT
  GTAGCTCCTG CTTGCCACTT CTGCCACAGC ACCTGTCTGC CACACTATGT AAGGCAAAAG
  AAATAAGTTG TGGTGTTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37405495	NES08751457	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27179967					SNP	T	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37405495	NES08751457	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29968818 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11424	CpG island 11424	646 bp distal
Pkn3	protein kinase N3	within coordinates
Rr396856	regulatory region 396856	982 bp downstream
Rr554208	regulatory region 554208	1186 bp distal
Rr554209	regulatory region 554209	212 bp distal
Rr554210	regulatory region 554210	17 bp distal
Tssr17085	transcription start site region 17085	1626 bp upstream