rs27179968 SNP Detail

Summary

• ID
  rs27179968
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29968757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCCCTGCA GCAGCGGCAG
  CGAGGTGACT CAGGACCCCG GTGGCCAGCA GGCCCCCAGC TCTGTAAGAG CTTTGTTTGC
  TCAGGCCTTT GGCTCTGGCC CTCCTGCTTG GGGCAGCCAA AGGATTTCCT GAGCCTCGCC
  CTTGCCCTCT GACAGTTAAG GCAGGACGAT CAACCTAGCT GAGGCCTGGG GCCCCTAAAC
  R
  GAGTAGCCAT TCTTTCATGG GGCTTAGGAG ATGGAACACC GAAAGGTAAG GATAAAATAG
  TGTGGCTTCC AGGATCCTGG GGATAGGAAG GGGGTCAGCA GGAGTTGCTC TGGAATAAGG
  TCAGCCTCCG AGAAGTTTTC TCTCCCTGCC TTTGATGGTG CCTCTAATCT GGTGAACAGC
  TGTAGCTCCT GCTTGCCACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37405496	NES08751456	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27179968					SNP	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37405496	NES08751456	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29968757 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11424	CpG island 11424	585 bp distal
Pkn3	protein kinase N3	within coordinates
Rr396856	regulatory region 396856	921 bp downstream
Rr554208	regulatory region 554208	1125 bp distal
Rr554209	regulatory region 554209	151 bp distal
Rr554210	regulatory region 554210	within coordinates
Tssr17085	transcription start site region 17085	1687 bp upstream