rs27179969 SNP Detail

Summary

• ID
  rs27179969
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29967938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTTCCGG AACCGCAGTG
  GAGGAGAGGA CTGGCGGGCA AGGCGCCATG GAGCCGGAGG GGGCTGTGCG CCAGGTGAAC
  CAAGCGCACG CAGCGACCGT GTTTGCAACT CTGAGCACAC GGTGCTCGGA TCTTCACACT
  ATTCTGGCCT CTCTGCCTGA GCCCTGGGTT AAGACGCTCT GGTGCCCAGG TCCCCGAAGT
  K
  ACGGAGATCC AGCCCGGCAG CACGCCTGTT ACCGTGGAAT ATGCCACCGG GGGTGGGGGT
  GGGGGTAAGA TAGGTCAAGT TCCCTAAAAT TCGATCTTCT AGAGACTTGC AGGAAGGTGG
  GAATTTGCCA GGAGCGCAAA GGTTGGAGTA TACAGCCTTC CAAGAGGACT GGGGGAGCGG
  GGAGGGGGTG GGGGGAGCGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37405497	NES08751455	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27179969					SNP	G	G	G	G	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37405497	NES08751455	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29967938 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11424	CpG island 11424	within coordinates
Pkn3	protein kinase N3	within coordinates
Rr396856	regulatory region 396856	102 bp downstream
Rr554207	regulatory region 554207	1587 bp distal
Rr554208	regulatory region 554208	306 bp distal
Rr554209	regulatory region 554209	168 bp proximal
Rr554210	regulatory region 554210	669 bp proximal