rs27179970 SNP Detail

Summary

• ID
  rs27179970
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29967568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCCCTGT GGACATCCTT
  ATGCTAAATC AGAACCTTGA CTCCCGCTGA GTCAGAAAAT GCGTTTTGCA CAAGTCTGAG
  TTAGTTCGTA TCTTATTTGG ATCTGGCCAT AATTTGGGTC AAGGTTTACT CCGTGACCAG
  GCCAGGCCCC AGCGCATGCT GCGGGCAAAG CTAGAGCAGA AATGGCCCTC GGCTTTCCCA
  W
  CTCTAAGAAC AGTTGCGGTG CAGAGCGTGA CGCTGCTCCC GCGTGGCCGG GAGGGGGCGC
  TGCTCCCCAG CTCCTGCGGG GCGCGCGAGT CTCCGGAGGG GGCGCCCGAC CGCGTGTCCC
  GCGCCACTTC CCGGGAAGTT TCAAGTTTGA AAGTCAGGCA CTGAGACCCG GGCTTCCGGA
  ACCGCAGTGG AGGAGAGGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37405498	NES08751454	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27179970					SNP	T	T	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37405498	NES08751454	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29967568 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11424	CpG island 11424	within coordinates
Pkn3	protein kinase N3	128 bp upstream
Rr396856	regulatory region 396856	within coordinates
Rr554207	regulatory region 554207	1217 bp distal
Rr554208	regulatory region 554208	43 bp proximal
Rr554209	regulatory region 554209	538 bp proximal
Rr554210	regulatory region 554210	1039 bp proximal