rs27179972 SNP Detail

Summary

• ID
  rs27179972
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29966720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTGTGCC ACACACTTTA
  TCCCAGCCAG CACTTGGGAG GCAGAGGGAG GTGAATGGGT AGCTGAGTTT GAAGTCAGCA
  AATGCTATAT GGTGAGTCCC TTTCTCGAAC AAAAAGAGCA ACCTCAGCAG CCTTCAAACG
  CACCATCCAT CTCCTGCTTC AGCCTTTCTG GTGCTAGGAT TGTAACCTTG TGTAGACTGG
  K
  TCCAGAGGTA GGTTCCAACT ACTGCTACTC ATAGGATGCC AAAAATGTTA GAGCCAGCCG
  GGCGTGGTGG CGCACGCCTT TAATCCCAGC ACTCGGGAGG CAGAGGCAGG CGGATTTCTG
  AGTTCGAGGC CAGCCTGGTC TACAGAGTGA GTTCCAGGAC AGCCAGGGCT ACACAGAGAA
  ACCCTGTCTC AAAAAAAAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37405500	NES08751476	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27179972					SNP	T	T	T	T	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37405500	NES08751476	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29966720 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11424	CpG island 11424	421 bp proximal
Pkn3	protein kinase N3	976 bp upstream
Rr396856	regulatory region 396856	815 bp upstream
Rr554206	regulatory region 554206	1682 bp distal
Rr554207	regulatory region 554207	369 bp distal
Rr554208	regulatory region 554208	891 bp proximal
Rr554209	regulatory region 554209	1386 bp proximal
Rr554210	regulatory region 554210	1887 bp proximal