rs27179973 SNP Detail

Summary

• ID
  rs27179973
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29965974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAGCTGTGG TTCTTTTTCT TGTTGCTAGA GGGTCAGAGA
  TTTAAAACAC TGCTCCTGCA AAGGACTTGG CTTTGACTCC TAGCACCTAC ATGCACTCAA
  Y
  ATCTTCTGAC CTCCAAAGAT ACAAGGCATC CACATGGTGC ACACACACAT GTGAACAAAA
  CATTCCTATA GGCACATAAA AAAAGTCCTG CTGGGCGGTG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37405501	NES08751496	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27179973					SNP	T	C	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37405501	NES08751496	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29965974 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11424	CpG island 11424	1167 bp proximal
Pkn3	protein kinase N3	1722 bp upstream
Rr396856	regulatory region 396856	1561 bp upstream
Rr554206	regulatory region 554206	936 bp distal
Rr554207	regulatory region 554207	356 bp proximal
Rr554208	regulatory region 554208	1637 bp proximal