rs27180289 SNP Detail

Summary

• ID
  rs27180289
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29119178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCAGGTCT TCTCACAGGA
  TTTGGAGGTA CTTCTGAGAA GAAAGCCCTC TCCTCAGCCC TCTCTTTTCT CATCCTCCCT
  CTTTCTGTTC TCTTCCTCAT CTGTTTTTCT CCCTATCGTC TGGCTTCTTT TCTTTCCCCA
  GCCCTACACT GCCTCAGTGT CTTACAAATC ACAATGAGAA TGGAGGAGCT TTTCGTGACT
  W
  TCACTGGTAA CTCTGGGCCA CCAGTGACTG GTCTCACACC TAGTCCTGAG TGGGAAGAGT
  CTGACTGACT GCCACAGGCT CCGTGACAAG CCCAGTGACC AGGAGAAAGC AACAGATTGC
  GGCTGGCTGA CCAGGAGGTC ACCCCTCCAT GCTCTGCTCC AGGTAGCATG GGGGACACAC
  GGAGCCCAGG GCGGCATGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37408508	NES08774483	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27180289					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37408508	NES08774483	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29119178 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11405	CpG island 11405	1054 bp distal
Ntng2	netrin G2	within coordinates
Rr553992	regulatory region 553992	986 bp proximal