rs27181928 SNP Detail

Summary

• ID
  rs27181928
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:27031088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAA AGAACTTCTC AAAGCCACAC
  M
  AGGTTGTATG TACTTAGCAA GCCTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37416649	NES08763563	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	C	A		C	A	A	C		A
ss320220669	CHEV_2_26996596	CHEVERUD	SCREENING_POP	f	SNP											A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27181928					SNP	A	A	A	A	A	A	A	A	C	A	A	C	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37416649	NES08763563	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27031088 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11367	CpG island 11367	828 bp proximal
Fam163b	family with sequence similarity 163, member B	within coordinates
Rr553477	regulatory region 553477	979 bp proximal
Rr553478	regulatory region 553478	1405 bp proximal
Tssr23189	transcription start site region 23189	1330 bp downstream
Tssr23190	transcription start site region 23190	1353 bp downstream
Tssr23191	transcription start site region 23191	1426 bp downstream
Tssr23192	transcription start site region 23192	1454 bp downstream