rs27185945 SNP Detail

Summary

• ID
  rs27185945
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30951683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGATCATC GTCCGCTGCC
  CGCCTTCCAT CTCCATGGCC AAGGGCTCCA ACCTGAGCAC CCCAACTCCT CCGCTATCAT
  CGTCACGAAT ATTCTAAAAG GGGGATTCCC AAGTGCGCCA AAACTTCTAA AACACCTGCT
  TCATTCATAG ACCTTCCTCG GAAAGTCTCA TAGGGGAGGG AAAGGGGGGG CACTCCCGCT
  Y
  CAGACACAAC ACTGCTGCCA TCAGATAAAG CGGTTGCCTG TTTATTTCAG AGAAATAGTC
  CTAAAACAGA ATATGTATGT GTGGATGTCA CACATGCGCG CGCGCGCACA CACACACACA
  CACACACACA CACACACACA CACACACACC AGAAAGGGGA GGGTGGTGGT GATCTAAATC
  TACTCATGGC GATTTAACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37403464	NES08753240	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27185945					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37403464	NES08753240	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30951683 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11463	CpG island 11463	within coordinates
Fnbp1	formin binding protein 1	within coordinates
Gm57456	predicted gene, 57456	1053 bp downstream
Rr396875	regulatory region 396875	within coordinates
Rr396876	regulatory region 396876	446 bp upstream
Rr554509	regulatory region 554509	1209 bp distal
Rr554510	regulatory region 554510	1847 bp proximal
Tssr17166	transcription start site region 17166	1198 bp downstream