rs27185948 SNP Detail

Summary

• ID
  rs27185948
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30951288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGGGGAC AGTCCTGGTG
  GCTTCCTTTA TTTTCTTCCC TATTCATGAG CAAATGTCAC CAAATATTTC CAAGTGTTTC
  CTTATTCCCT GGGGCTTTTC GGTCCAGTAT GGCCGGAGTC TTCTCAGCTA ACCCAGGCAG
  GTTTCAGCCA CCACCTTTTT CCCCTTCGCT GGCAGCCTGG CTGCTCCTCC TAGCCATATG
  Y
  TCAGCTAACC TGGGAGGGTT TCAGCCACCA CCTTCTTCCC CTTTGCGGGC GAGGAGGCCT
  GTCAACATCC TGGCCATGTG CTCTGCCCTT CCGCCACCGA CAGAGTCCCC CGCCAAGCGC
  ATTAACTGAA GTCTCTGTGA CAGTCATCCC TAGCTACCTT CAAAAATCCT CCCCTCATGG
  CAGATGGCAG CCATCCAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37403467	NES08753237	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27185948					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37403467	NES08753237	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30951288 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11463	CpG island 11463	12 bp proximal
Fnbp1	formin binding protein 1	within coordinates
Gm57456	predicted gene, 57456	658 bp downstream
Rr396875	regulatory region 396875	256 bp upstream
Rr396876	regulatory region 396876	841 bp upstream
Tssr17166	transcription start site region 17166	803 bp downstream