rs27185949 SNP Detail

Summary

• ID
  rs27185949
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30951204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTCTCAC TGGCTTCTGA
  CCTGGTGACC TTAACCCGAG TCCCACTTTC CCCACACCCA CACGTTCCAG TCTTGCTGGG
  CAGGCCAAGG GGACAGTCCT GGTGGCTTCC TTTATTTTCT TCCCTATTCA TGAGCAAATG
  TCACCAAATA TTTCCAAGTG TTTCCTTATT CCCTGGGGCT TTTCGGTCCA GTATGGCCGG
  M
  GTCTTCTCAG CTAACCCAGG CAGGTTTCAG CCACCACCTT TTTCCCCTTC GCTGGCAGCC
  TGGCTGCTCC TCCTAGCCAT ATGTTCAGCT AACCTGGGAG GGTTTCAGCC ACCACCTTCT
  TCCCCTTTGC GGGCGAGGAG GCCTGTCAAC ATCCTGGCCA TGTGCTCTGC CCTTCCGCCA
  CCGACAGAGT CCCCCGCCAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37403468	NES08753236	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27185949					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37403468	NES08753236	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30951204 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11463	CpG island 11463	96 bp proximal
Fnbp1	formin binding protein 1	within coordinates
Gm57456	predicted gene, 57456	574 bp downstream
Rr396875	regulatory region 396875	340 bp upstream
Rr396876	regulatory region 396876	925 bp upstream
Rr554509	regulatory region 554509	730 bp distal
Tssr17166	transcription start site region 17166	719 bp downstream