rs27185965 SNP Detail

Summary

• ID
  rs27185965
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:30942876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGCGAGT CAGAGTTGGT
  GAGACCAAGG AGGAAAATGA ATGACTCGGA ATCTCTGAAG GGGAAGTGTG AGGTGCTTCC
  AGCACGGACT AGAGAGTCAA AGACCTCAGG CCTCCTGGCT CTCTGCTGCT CATTCCCCTC
  CGCATGGCTC TTTCCTTCCT CTCTTTCTGT CATTCGTCTG CTCTCTGGGA GTCTAGGCTC
  R
  GGCTCTCTCT CCCTCTGGAT GCTACGGGAA AACACACTGG GTCTACTCAC AAAGTAAAGA
  CGCAGAATGA GACATGCAAC ATGGTGCGCA AGAGACGCAG GACTCCGGAG CGGAACTTAC
  CCCACGCTTT AGGCTCCGGA AGCAGTGGAT TTTGGGTTTG GAGGTCATGA ACTCGTTGAA
  GCGGTGGGAG AGGGGTTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37403484	NES08750748	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27185965					SNP	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37403484	NES08750748	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30942876 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fnbp1	formin binding protein 1			Intron
				Noncoding-Transcript-Variant
Rr554507	regulatory region 554507			within coordinates
Tssr23425	transcription start site region 23425			1666 bp upstream
Tssr23426	transcription start site region 23426			732 bp downstream
Tssr23427	transcription start site region 23427			1333 bp downstream