rs27185966 SNP Detail

Summary

• ID
  rs27185966
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:30942596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACCGAGG AAGGTGGGGA
  CTGAGTGGAG AGGGAGCCGT GGAGGAATGT CGCCGCTGTG GTGCCTTCTC CCTTTGCAGA
  GAGATGCAGG TGTGAGAGGT ATGCTATTGT TACCCCTTAG CTTCACAAGG GAACCAGTAA
  GCCCGGTCCG ATTCCTTCCT CCTCGCCAGC AGCATCATTT GGGCAGCAGA GCCTGTGCCG
  Y
  ATCCCTGTCT GTAATTACTC AACACAGATT TTTCTGACTG TCTAGTCGCT TCCACTTCCT
  CATCTTCTAC ATTGTCTGAG AGAGCGAGTC AGAGTTGGTG AGACCAAGGA GGAAAATGAA
  TGACTCGGAA TCTCTGAAGG GGAAGTGTGA GGTGCTTCCA GCACGGACTA GAGAGTCAAA
  GACCTCAGGC CTCCTGGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37403485	NES08750747	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27185966					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37403485	NES08750747	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30942596 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fnbp1	formin binding protein 1			Intron
				Noncoding-Transcript-Variant
Rr554507	regulatory region 554507			within coordinates
Tssr23425	transcription start site region 23425			1386 bp upstream
Tssr23426	transcription start site region 23426			1012 bp downstream
Tssr23427	transcription start site region 23427			1613 bp downstream