rs27186016 SNP Detail

Summary

• ID
  rs27186016
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30926759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGTCCTGG GCACAGTTAG
  TGACCGTCTG GTGTGTCTGG CCATCATACA GTCCACTCTG CCGGCGTGCC TGCTCACTCC
  GAGCTGGGAG TCTGCCTTCT ACCTCAGCCA GCCAGGCCTG GAAGCAAAAG CCACAGAAGA
  CTTAGACCCA GGCTAGCCTA GGCTAGATCA TGAGCTGTTG GGCCTTAATT CAGAGCTAGA
  M
  AGTCACTTAA AGCCTGATGT CTCAGACCCT GCACTATACA GGTAGGCTCA CAGACAACGA
  CTTCCTTCTT CTGAAAGTTG GGAGACAGGT AGGAAAGCCC CCACTGACCA AATTTACCAA
  TCACCTCACA GGACAGACAG CAGGCTCCAC TGGGCCAAAC TCTTGGGCAG CCATGTAATC
  ACGGATAAAA TTATTCTATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37403535	NES08751259	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27186016					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37403535	NES08751259	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30926759 () rs orientation: forward

Symbol	Name	Function Class
Fnbp1	formin binding protein 1	within coordinates
Rr42654	regulatory region 42654	1442 bp proximal
Rr64010	regulatory region 64010	within coordinates
Tssr23421	transcription start site region 23421	1196 bp upstream
Tssr23422	transcription start site region 23422	975 bp upstream
Tssr23423	transcription start site region 23423	3 bp downstream
Tssr23424	transcription start site region 23424	36 bp downstream