rs27186020 SNP Detail

Summary

• ID
  rs27186020
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30924535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGTGTTG GGTGTGACAC
  AAAGCAAAGC CTCATTGATG ATGCCCTGGC TCAGCCTTTA TCACAGCGAA CACCTTTGGT
  CCCTACTGAT GATGCCCTGG TACAGCCTTT ATCACAGATC CTCAGAGGCT CTTCTCTCAC
  AGCATCCTCT GTACCTCTCT GGACTGCATC ATGTCCAGGC GGAGGCATGT GCTGACGCTC
  Y
  ACCTGTTACC CTGCTGATCC TATGTAGGGG ACAGTGGTGT GCCTATCGGC AGCTTAAATA
  CCATCAGCAG CTCCTTAGTG CCAGCCAAGT AACAGCACCC AGTTACTCTA TTCCCTACTC
  TGAGGTGTTT GTGTGTGTTG TGTAATGTGT GAGTGTGTAG TATGAATGGA TAAGTAAGAG
  TGTGTAGTGT GTATGTGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37403539	NES08751272	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27186020					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37403539	NES08751272	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30924535 () rs orientation: forward

Symbol	Name	Function Class
Fnbp1	formin binding protein 1	within coordinates
Tssr23421	transcription start site region 23421	993 bp downstream
Tssr23422	transcription start site region 23422	1201 bp downstream