rs27186025 SNP Detail

Summary

• ID
  rs27186025
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30923717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTCCTCCC TCAGCTTCCA
  CTGTACCCTC ATCTCTTTCC TTTCTGGCAT TTTCTAAAAA GTCAAGGTTC TACTTTCCCA
  GCTCTCCTTT AATGTTGCCT GGTAGCCTAG GAGACTCGGG TTCACTGGGA CACTCTTACT
  CGTCCTTCCC CAGGACATCT CGAGGACCTA AGGATGAGCC ATCGGGCTAG CCATGGCTCT
  Y
  CTCTGCCTTT TGCTCAGGTC TTTCAACCAC AGTATGGCTG TGTCCTCTTT TTAGCCAAGG
  CCCCCAGACA GTTCTCTAAG ATCATTTAAA AGCCAGCCAC ACCTGTAGGC TGGTTTGGGA
  AGCGTGTGAC GATTAGTTTT GTCAGCTGTG AAAAACCACC AGGAAGAGTC AGTGAGGAAC
  TGTCTACAGC AGGTCGGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37403544	NES08751312	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27186025					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37403544	NES08751312	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30923717 () rs orientation: forward

Symbol	Name	Function Class
Fnbp1	formin binding protein 1	within coordinates
Tssr23419	transcription start site region 23419	1926 bp upstream
Tssr23420	transcription start site region 23420	1843 bp upstream
Tssr23421	transcription start site region 23421	1811 bp downstream