rs27186034 SNP Detail

Summary

• ID
  rs27186034
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:30923121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTCTGAGT CGCTTGCTCT
  CTGCTGACCT CTTGAAGGCC TGTAACAGCC ACAGTGGTGG GGAGAGACAA CTCCAATGCT
  TTTTGTTTTG TTTTAAGTGG ATTAAATATA AGTCTTAGCA CCTTTGGCGT TTTTGTCTAA
  ATAGACTTCG ACGTAGGAAG TGGGGACGTA ACCCTCCTCG TCTTCATTTC TGCGGATGCG
  R
  GTCCACCCAT CGCCTTTGTC CTCTTCAATC ACGCTCAGCG TCTCTCCTTC AACTACGGAA
  ATGGTGCCTT CGTTCTGACC TGCAGGAGTA CAGTGAGGCG TGAGGTCTCA GGCAGTGCTG
  GGAGGGCCCT GCCAATGGCG TACTAGAGGC AAAGTGAGAT CTGTGCACAG AATGTCCCCT
  CGGTCCTCTG ATGCACGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37403553	NES08751302	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27186034					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37403553	NES08751302	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30923121 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fnbp1	formin binding protein 1			Coding-Synonymous
				Noncoding-Transcript-Variant
Tssr23418	transcription start site region 23418			1449 bp upstream
Tssr23419	transcription start site region 23419			1330 bp upstream
Tssr23420	transcription start site region 23420			1247 bp upstream