rs27187388 SNP Detail

Summary

• ID
  rs27187388
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:24235991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTATGTGT ATATATATAT
  ATATGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT ATCCTTGATT CAAGAACAGC
  ATGCTAAATG CAGTCTTTAA GTCTTATGTT TTAAAATATT CCATGCATGG ACAACAAGAC
  AGTTAACTGT GCTCACTTTC TCAGACACCT AGATGTTCAG TAAGTGATGG ACAGGCATCC
  R
  GGAATAATGC TAGCTTTGGG ATCGAGCAAA GAGGAATACT TCAGCAGGAC ACAGTCAAAG
  GCTCAGACCA ACAGTCTACA CTCTGTATCT GTGTTGACTT GGAAGATATC TCTCGTTGGA
  GTCCCCAGTT TCCTTATCTG TAACATGATA CTGCTCTGAT GATAACCCCT TGTGTGCCTT
  ACAGGGTGAA CACTAAATAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37426416	NES08783633	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27187388					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37426416	NES08783633	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:24235991 () rs orientation: forward

Symbol	Name	Function Class
Il1rn	interleukin 1 receptor antagonist	within coordinates
Rr41952	regulatory region 41952	1610 bp proximal
Rr56387	regulatory region 56387	391 bp distal
Tssr16578	transcription start site region 16578	707 bp downstream
Tssr16579	transcription start site region 16579	684 bp downstream
Tssr16580	transcription start site region 16580	632 bp downstream
Tssr16581	transcription start site region 16581	557 bp downstream
Tssr16582	transcription start site region 16582	1475 bp upstream
Tssr16583	transcription start site region 16583	1724 bp upstream