rs27187389 SNP Detail

Summary

• ID
  rs27187389
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:24235927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATGTATG TGTATATATA
  TATATATATA TATATATATA TAATGTGTGT GTATACACAT ATGTATGTAT GTGTATATAT
  ATATATATGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTATCCTT GATTCAAGAA
  CAGCATGCTA AATGCAGTCT TTAAGTCTTA TGTTTTAAAA TATTCCATGC ATGGACAACA
  R
  GACAGTTAAC TGTGCTCACT TTCTCAGACA CCTAGATGTT CAGTAAGTGA TGGACAGGCA
  TCCGGGAATA ATGCTAGCTT TGGGATCGAG CAAAGAGGAA TACTTCAGCA GGACACAGTC
  AAAGGCTCAG ACCAACAGTC TACACTCTGT ATCTGTGTTG ACTTGGAAGA TATCTCTCGT
  TGGAGTCCCC AGTTTCCTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37426417	NES08783632	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27187389					SNP	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37426417	NES08783632	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:24235927 () rs orientation: forward

Symbol	Name	Function Class
Il1rn	interleukin 1 receptor antagonist	within coordinates
Rr41952	regulatory region 41952	1674 bp proximal
Rr56387	regulatory region 56387	327 bp distal
Tssr16578	transcription start site region 16578	643 bp downstream
Tssr16579	transcription start site region 16579	620 bp downstream
Tssr16580	transcription start site region 16580	568 bp downstream
Tssr16581	transcription start site region 16581	493 bp downstream
Tssr16582	transcription start site region 16582	1539 bp upstream
Tssr16583	transcription start site region 16583	1788 bp upstream