rs27187391 SNP Detail

Summary

• ID
  rs27187391
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:24234749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGGCCAT TCCTTCAGTC
  TCTGTTCCAT AGTTGTTCTG CATTTTTAGG GGAGACAAAT TTTGAACCAA AAGTTTTATA
  GTTTTGTGTG CATTTGGAAT GTAAATAAAT AAGATAATTA ATTTTACAAA AGAAACTTCA
  ACTTTCCAGA TGCAGAATTG GGAAAAGATG GCCAATTTTA ACACACCTCT TGGGAGGACT
  Y
  ATTTCTCTAG GGCAGAGGTC AGCAAACTTC TACACTACGG GTGACCTTTC CTGTTTTGTA
  AACAAGGCAT GTTGGAGCAG AGTTGACTTT TCTGGCTTAC AAATTGCTTG TGAGCGCTTT
  TGCACCATGA CAGCCGAGCT GAGTATTATG TTAGATTGGA TAGTTCACAA AATACCAAAT
  ATTTACCATC CGGTTCTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37426419	NES08783711	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27187391					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37426419	NES08783711	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:24234749 () rs orientation: forward

Symbol	Name	Function Class
Il1rn	interleukin 1 receptor antagonist	within coordinates
Rr56387	regulatory region 56387	651 bp proximal
Tssr16578	transcription start site region 16578	524 bp upstream
Tssr16579	transcription start site region 16579	545 bp upstream
Tssr16580	transcription start site region 16580	568 bp upstream
Tssr16581	transcription start site region 16581	670 bp upstream