rs27187392 SNP Detail

Summary

• ID
  rs27187392
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:24234255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAACCCAG TTCTGAAAAT
  CCTCTGCCTG TGCTCCTGAC AGCACTCTCC CTTGTTGGAA CACACAAGGA CTCTCTTCAC
  CTTTTGATAA CATAAACTAG GAAGAGCCTT ACCTTTCCCC AACTGTCCAG AAAATTGTGT
  GAAGGGAACT TAATGTTTTT TAATGCTCAC TTGGGATCAA AATTTAACTC CCTTCTTTCC
  Y
  ACTACCTCCA AGAAAGCCAT GATCCTCCTC ATTCTGAGAA TAAAGAAGCA GAGACACAAA
  TAAAAGATTT TTTCAAGGTC ACACAGATGA TAGTGACAAG CAGCAAAGAC CGGTTGCTGC
  CCACACACTT AATCCACTTT TCCATGATTT GGGAATGAAG TCACCTCTAA AGGACTCCAA
  CTTCACAGAG GACCACCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37426420	NES08783733	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27187392					SNP	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37426420	NES08783733	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:24234255 () rs orientation: forward

Symbol	Name	Function Class
Il1rn	interleukin 1 receptor antagonist	within coordinates
Rr56387	regulatory region 56387	1145 bp proximal
Tssr16578	transcription start site region 16578	1018 bp upstream
Tssr16579	transcription start site region 16579	1039 bp upstream
Tssr16580	transcription start site region 16580	1062 bp upstream
Tssr16581	transcription start site region 16581	1164 bp upstream