rs27187393 SNP Detail

Summary

• ID
  rs27187393
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:24234208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATCTCTTT AAAGTAGTGA
  GAGGTTGAGA TAAGGTGACC ACTATGCTCC AACCCAGTTC TGAAAATCCT CTGCCTGTGC
  TCCTGACAGC ACTCTCCCTT GTTGGAACAC ACAAGGACTC TCTTCACCTT TTGATAACAT
  AAACTAGGAA GAGCCTTACC TTTCCCCAAC TGTCCAGAAA ATTGTGTGAA GGGAACTTAA
  K
  GTTTTTTAAT GCTCACTTGG GATCAAAATT TAACTCCCTT CTTTCCTACT ACCTCCAAGA
  AAGCCATGAT CCTCCTCATT CTGAGAATAA AGAAGCAGAG ACACAAATAA AAGATTTTTT
  CAAGGTCACA CAGATGATAG TGACAAGCAG CAAAGACCGG TTGCTGCCCA CACACTTAAT
  CCACTTTTCC ATGATTTGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
ss37426421	NES08783731	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
rs27187393					SNP	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37426421	NES08783731	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:24234208 () rs orientation: forward

Symbol	Name	Function Class
Il1rn	interleukin 1 receptor antagonist	within coordinates
Rr56387	regulatory region 56387	1192 bp proximal
Tssr16578	transcription start site region 16578	1065 bp upstream
Tssr16579	transcription start site region 16579	1086 bp upstream
Tssr16580	transcription start site region 16580	1109 bp upstream
Tssr16581	transcription start site region 16581	1211 bp upstream