rs27187394 SNP Detail

Summary

• ID
  rs27187394
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:24234104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAAATGA GGTCAAATTC
  ATCAAGATCA ATGAGTGCCA TAAGAACTGG GGTTTGATCC TCTGCCATTA ACAATCTCTA
  CAACTTTTCC TAATGTCTCT TTCTACATCT CTTTAAAGTA GTGAGAGGTT GAGATAAGGT
  GACCACTATG CTCCAACCCA GTTCTGAAAA TCCTCTGCCT GTGCTCCTGA CAGCACTCTC
  Y
  CTTGTTGGAA CACACAAGGA CTCTCTTCAC CTTTTGATAA CATAAACTAG GAAGAGCCTT
  ACCTTTCCCC AACTGTCCAG AAAATTGTGT GAAGGGAACT TAATGTTTTT TAATGCTCAC
  TTGGGATCAA AATTTAACTC CCTTCTTTCC TACTACCTCC AAGAAAGCCA TGATCCTCCT
  CATTCTGAGA ATAAAGAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37426422	NES08783729	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27187394					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37426422	NES08783729	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:24234104 () rs orientation: forward

Symbol	Name	Function Class
Il1rn	interleukin 1 receptor antagonist	Intron
Rr552851	regulatory region 552851	625 bp proximal
Rr552852	regulatory region 552852	1082 bp proximal
Tssr16578	transcription start site region 16578	1169 bp upstream
Tssr16579	transcription start site region 16579	1190 bp upstream
Tssr16580	transcription start site region 16580	1213 bp upstream
Tssr16581	transcription start site region 16581	1315 bp upstream