rs27187396 SNP Detail

Summary

• ID
  rs27187396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:24233269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTGCACT CTCTTAGGAA
  TCCTGCTACA CATACAACTG AGGCTCCAAT CCTTGCATTT AACTCTATGC ATTCCTTGTC
  ATCTCCTGCC TCTGGCAATT ATCAACCTAT TGTCTACTTC TGAATTTTAA TGTGAATTTT
  ATTGATATGC AAAATGTAGC ATTTGTACAA ATAAATAAGT AATAAGAGAG TCCAGAGTGG
  Y
  TTCAAAAGCA CATTAAACAA GCATAAGAGC TTCTGGGAGC AGGATGGCAG CTGCTTCTCC
  TTTCAGCAGC TGTGATAGCA ACAGTTTGTA CCTGATGACT AATAAACCTT TCAGAAACTT
  GAAAGCTTAA TTAATTCAAC AGTTTCTGGA TATTGTAAAT AACTAGACAA GTTTATGCAC
  ATTCCCTCTT TCAGCCAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37426424	NES08783771	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27187396					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37426424	NES08783771	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:24233269 () rs orientation: forward

Symbol	Name	Function Class
Il1rn	interleukin 1 receptor antagonist	Intron
Rr552851	regulatory region 552851	1460 bp proximal
Rr552852	regulatory region 552852	1917 bp proximal