rs27187808 SNP Detail

Summary

• ID
  rs27187808
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:140807920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCTCAGATA ACGTGAAATC AGCCAAATCA GTTCTCTGCA
  GTTTTCCCCA GTGTTTGTTT CAAGGATGAA ACTAAGTAAT GTATCCTCCG GAGGAGAAAA
  W
  TTCTGAGCTT CAGCTGTGAT TTGCATTTTG AAAATGTTAA AGCCCCAGCC CAAATTACTT
  TTCATTTATT TTGTGCCTTC TCTGTTGGGA AATGTGTTT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
ss37436530	NES08955372	PERLEGEN	MM_PANEL2	f	SNP	T		T		A		A	A
ss147692894	ENSMUSSNP4477346	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		A
ss320529134	CHEV_2_140791736	CHEVERUD	SCREENING_POP	f	SNP						T			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
rs27187808					SNP	T	T	T	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37436530	NES08955372	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:140807920 () rs orientation: forward

Symbol	Name	Function Class
Macrod2	mono-ADP ribosylhydrolase 2	within coordinates
Tssr20486	transcription start site region 20486	54 bp downstream