rs27187809 SNP Detail

Summary

• ID
  rs27187809
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:140807832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACTCTGTGT TTCAGTAATG GGAACAGCCT GCATTCCTGG
  AAACTTGAGG CATTTTTTTT TCCTTGAGCA TAACATAGGC CATGTTCTTG CTCAGATAAC
  R
  TGAAATCAGC CAAATCAGTT CTCTGCAGTT TTCCCCAGTG TTTGTTTCAA GGATGAAACT
  AAGTAATGTA TCCTCCGGAG GAGAAAATTT CTGAGCTTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
ss37436531	NES08955371	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G			G	A		A	A
ss45271757	mCV24945586	ABI	CRAMUS_MOUSE	f	SNP		G				G	A
ss147692887	ENSMUSSNP5462262	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					A
ss320529132	CHEV_2_140791648	CHEVERUD	SCREENING_POP	f	SNP										G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
rs27187809					SNP	G	G	G	G	G	G	A	G	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37436531	NES08955371	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:140807832 () rs orientation: forward

Symbol	Name	Function Class
Macrod2	mono-ADP ribosylhydrolase 2	within coordinates
Tssr20486	transcription start site region 20486	15 bp upstream