rs27189273 SNP Detail

Summary

• ID
  rs27189273
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:141016239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTTATCAAA ACTTCTCAAT AGTCTTCTCA TGACCAAACT
  ACCACATATT GTTTCTTCTC TTTTTCTCAC TCTGAAAGTA GTAATGAAGA TGCTTTCTCT
  R
  ATGCTCCCTT CCTGGTCCTC ATCCCTTTCT GTCTCCACAG AGCTTTTCAT CTCAGAAATG
  TAGGATACAA AAATGTTTCT TGGCCTGGGA ATGGTAGGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37435492	NES08949182	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	G	G	A	G	G	A	G	G	A
ss147699399	ENSMUSSNP1305256	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27189273					SNP	A	A	A	A	A	A	A	G	G	A	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37435492	NES08949182	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:141016239 () rs orientation: forward

Symbol	Name	Function Class
2900060K15Rik	RIKEN cDNA 2900060K15 gene	751 bp upstream
Macrod2	mono-ADP ribosylhydrolase 2	within coordinates