rs27189275 SNP Detail

Summary

• ID
  rs27189275
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:141016069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACTTAATGG CACTGGCTGT TTAAAATGCT GCTGATGAGT
  GTTTATGATT TGACAAGAAT TTTGATATAA TTCATATTCT GAGGAGAACT AGTATTGGTG
  Y
  TATATTTTTT TCCATACTGT GTAATTTTGG TTATAGGCAT AGCCAATTTT TTGAAAAATT
  TTGATCAATA TTTATCAAAA CTTCTCAATA GTCTTCTCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37435494	NES08949180	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	C	T	C
ss147699385	ENSMUSSNP3312147	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27189275					SNP	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37435494	NES08949180	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:141016069 () rs orientation: forward

Symbol	Name	Function Class
2900060K15Rik	RIKEN cDNA 2900060K15 gene	921 bp upstream
Macrod2	mono-ADP ribosylhydrolase 2	within coordinates