rs27189280 SNP Detail

Summary

• ID
  rs27189280
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:141015006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAACTTCAC AAACACTTCT TAATCATCAC AGACAGAATA
  TTGTTTGCTG TGTTAATACA TATTTAATAG CCTGGATTTA TGTTTGTCTG TTTTAAGGAG
  Y
  AGATTAGTGA ATGCCAGAGC TGTCACCCTT GATAAAGCTG TTCCACATCT TTGGAGTTTA
  AACATGATAC GTTAAAGTGT GTGTGCTGTC CCTTATGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37435499	NES08949175	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		T	T	C	T	T	C	T	T	C
ss45348733	mCV22339756	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					C		T
ss147699359	ENSMUSSNP1447174	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27189280					SNP	C	C	C	C	C	C	C	C	T	T	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37435499	NES08949175	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:141015006 () rs orientation: forward

Symbol	Name	Function Class
2900060K15Rik	RIKEN cDNA 2900060K15 gene	1984 bp upstream
Macrod2	mono-ADP ribosylhydrolase 2	within coordinates