rs27190355 SNP Detail

Summary

• ID
  rs27190355
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:35798233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGACACA AGGGACCAGT
  CCAACAGCTG TGAGGTCTGA GACTCAAGGG AAATTCCAAC TCTTGATGTA CACAACAATT
  CCTGAGGCCA GCTAAGACTG AAGCTGCTGT CATGTAGGTG ACCCAGGCCA AACAAGAAGG
  GCAACACGGG CCATCTGAGA GGCAAAGTGG GAGGTGATGA GGGTGGTTGC AAAGAACAAC
  Y
  TGAGTAGATG GCAAAGCAGG AGAGAACAGA AGACATTCAG GAGACTGCCA ATGGTGGAGA
  ACAGCAAGAG AATGACCACT AATGTCAGGA ATAGACATAA GCCTCCACTC ATGAGATCAC
  ACAAGACTCC CACTCAAGAG ATCACACAAG ACTCCCACTC ATGAGGTCAC ACAAGACTCC
  CATTCAAGAG ATCACACAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37390979	NES08748382	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27190355					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37390979	NES08748382	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:35798233 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm35396	predicted gene, 35396			within coordinates
Rr555813	regulatory region 555813			1324 bp distal
Rr555814	regulatory region 555814			1537 bp distal
Rr555815	regulatory region 555815			1300 bp proximal
Ttll11	tubulin tyrosine ligase-like family, member 11			Intron
				Noncoding-Transcript-Variant