rs27190356 SNP Detail

Summary

• ID
  rs27190356
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:35797956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCAAGGC CTGTGTGAGA
  AGCAAGGCAG AGCACCTGGA GGGAGGAAGT TCAGCAGCCA GACTAGAAAG CCACAGAGCG
  TTATTAGCAA CAAGGGGAAA GCATGGGGAC AAGTTCTGAA TTATGATGAC ACCAGAGATG
  TCAAAGATAG TTAGAGCCAT GTTTTGTCAC ATTGGAAGAC CTACGTTTCA TTCTAACAAT
  S
  CAGGCCATTG GTGTCATGGG AACGGGCTGT GGATCTTCAG GACAAACAAG ACTCTGATAG
  ACAAAGTGTG TACTGGGCAG GACACAAGGG ACCAGTCCAA CAGCTGTGAG GTCTGAGACT
  CAAGGGAAAT TCCAACTCTT GATGTACACA ACAATTCCTG AGGCCAGCTA AGACTGAAGC
  TGCTGTCATG TAGGTGACCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37390980	NES08748381	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27190356					SNP	G	G	G	G	G	G	C	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37390980	NES08748381	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:35797956 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm35396	predicted gene, 35396			within coordinates
Rr555813	regulatory region 555813			1047 bp distal
Rr555814	regulatory region 555814			1260 bp distal
Rr555815	regulatory region 555815			1577 bp proximal
Ttll11	tubulin tyrosine ligase-like family, member 11			Intron
				Noncoding-Transcript-Variant