rs27190358 SNP Detail

Summary

• ID
  rs27190358
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:35797782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTGGGGC TCAACCAGCT
  AACTAGTGCT AAGCAGGGGA TTCTCTATTG GAGGCTGTAT CACAAACATT CATGGAACCA
  CCAGAGAGAT CATGCTGTGC GTTACCATCA GCACACAGGG TGACCTGTGA GCTCAGGGAT
  TTGCACGGGA GATTTATGAC GAGTTTGCAT CAAGCAGGCA AGGCCTGTGT GAGAAGCAAG
  K
  CAGAGCACCT GGAGGGAGGA AGTTCAGCAG CCAGACTAGA AAGCCACAGA GCGTTATTAG
  CAACAAGGGG AAAGCATGGG GACAAGTTCT GAATTATGAT GACACCAGAG ATGTCAAAGA
  TAGTTAGAGC CATGTTTTGT CACATTGGAA GACCTACGTT TCATTCTAAC AATGCAGGCC
  ATTGGTGTCA TGGGAACGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37390982	NES08748379	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27190358					SNP	G	G	G	G	G	G	T	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37390982	NES08748379	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:35797782 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm35396	predicted gene, 35396			within coordinates
Rr555813	regulatory region 555813			873 bp distal
Rr555814	regulatory region 555814			1086 bp distal
Rr555815	regulatory region 555815			1751 bp proximal
Ttll11	tubulin tyrosine ligase-like family, member 11			Intron
				Noncoding-Transcript-Variant