rs27190852 SNP Detail

Summary

• ID
  rs27190852
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:37739065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTATGGTT AAGGCCAGTG
  CCTTCTCATT TCCTGTGAGA GAAGTTATTT CCACTTTGAG ATTTGTGTTG TACCTGTCTT
  ATTCCAGTCT ACTTCCCATA ACAGCGAATG TAAATTAAAA TATGAATATT GATACTAAAT
  CAGTAGCCAA AATTGGAGTC TTGGTGATTG AGGCTGCAGC ATATTTTAAT GTGTCTAAAG
  W
  CAGGGAGCTG ACAGCTGTGT GATACGGTGT GAAAATGTCT GTTCTATGAG TCTACCTGCT
  CTCCCTGCCC CCACATGCTT GCTCACGCCC TTCATTACGG TTGCGAGCGT TTGGCTGGAA
  AGTCAAGCCA ACTGTGAGTT TGCTCCTTTC AATCACAGAC ACTAATCAAG CTCAACTTGT
  CGTTTAAAGA ACAGTGATTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37387878	NES08744021	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27190852					SNP	T	T	T	T	T	A	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37387878	NES08744021	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:37739065 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dennd1a	DENN domain containing 1A			Intron
				Noncoding-Transcript-Variant
Rr555987	regulatory region 555987			496 bp proximal