rs27190853 SNP Detail

Summary

• ID
  rs27190853
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:37738498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCAGGGA AGGGGTGGGC
  CACTCCTTCC TGAAGGTTCA CAGAGGAGGA AAACAGAGCT ACGCAACTTA AGAGGCCAAC
  TCAAATGACC TTAAGAGGAG CTGGGGATAG GCTTCCTGCA GCCAAGAAGC AAAGCCACGG
  GAGGCATTCA CAACTGTAGT TGGGAGTAGG GCCTAGCATT TCAAGAATGC ATAGAGTACC
  Y
  CACTTTCTGC TGAGCAGGCT GAGGTCAGCT TTAACCAAAG AAATGGTTTG GAAAAATTCC
  TCCTGTGGCT GTGGGAACAA CCTATAGGAG GTGGGTCCCA TGGTGTTTGG GCAGACTGTC
  TTGTTCTAGG TATGAAATGG AGAGAATATA TATTCCCATT CATGGAGCTG CTACTAAGTA
  CTACTGTTAA AACACCTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37387879	NES08744031	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27190853					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37387879	NES08744031	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:37738498 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dennd1a	DENN domain containing 1A			Intron
				Noncoding-Transcript-Variant
Rr555987	regulatory region 555987			1063 bp proximal