rs27191312 SNP Detail

Summary

• ID
  rs27191312
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:34851070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTCCCAT ATCCACTCTC
  TCTTCTCACA CTGCAATACA AAGTTTAAAG AAGATTGTCA GCACAGCTGC TGAAACTCCA
  GGGAATCTAC TCAGCCCTGT CATAAGCCCA CACACTGTCA AATGCTCCGG GCCTGCCCTA
  ATTTCAGTCC CATCAGAAGC AGGCCAGTGG ACTTCTAGCC TTCCTTTCTA TGACAGCACT
  Y
  TCCTTCACAC CCTTCAGAGT TATTTTTTAC ACTGCGGTGG CTTTTTACAG GTCTCTTTCA
  CCGCCTTCTC ACCTCCATCT TCCTTAGTCT CATCTCCATG GCTCCCAGAA TGGACAATCT
  ATCTGCTGAA CAGAGGCGTC TCATCCTCCT TCTAGTCTTT GGGGACCCAC CTGGGCCACA
  CCCCACACTT TGGAACATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37393731	NES08751679	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27191312					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37393731	NES08751679	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34851070 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11563	CpG island 11563			301 bp proximal
Gm46733	predicted gene, 46733			1621 bp upstream
Gm52552	predicted gene, 52552			within coordinates
Gm74854	predicted gene, 74854			1924 bp downstream
Rr396907	regulatory region 396907			1906 bp upstream
Rr555567	regulatory region 555567			1987 bp distal
Rr555568	regulatory region 555568			within coordinates
Rr555569	regulatory region 555569			467 bp proximal
Rr555570	regulatory region 555570			517 bp proximal
Rr555571	regulatory region 555571			1288 bp proximal
Traf1	TNF receptor-associated factor 1			Intron
				Noncoding-Transcript-Variant
Tssr17440	transcription start site region 17440			30 bp downstream
Tssr17441	transcription start site region 17441			343 bp upstream
Tssr17442	transcription start site region 17442			625 bp upstream
Tssr17443	transcription start site region 17443			644 bp upstream
Tssr17444	transcription start site region 17444			661 bp upstream
Tssr17445	transcription start site region 17445			826 bp upstream
Tssr23673	transcription start site region 23673			497 bp downstream
Tssr23674	transcription start site region 23674			693 bp downstream
Tssr23675	transcription start site region 23675			731 bp downstream
Tssr23676	transcription start site region 23676			744 bp downstream
Tssr23677	transcription start site region 23677			762 bp downstream
Tssr23678	transcription start site region 23678			895 bp downstream
Tssr23679	transcription start site region 23679			1869 bp downstream
Tssr23680	transcription start site region 23680			1923 bp downstream