rs27191313 SNP Detail

Summary

• ID
  rs27191313
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:34851054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAATTATCC CAAATTCTTC
  TCCCATATCC ACTCTCTCTT CTCACACTGC AATACAAAGT TTAAAGAAGA TTGTCAGCAC
  AGCTGCTGAA ACTCCAGGGA ATCTACTCAG CCCTGTCATA AGCCCACACA CTGTCAAATG
  CTCCGGGCCT GCCCTAATTT CAGTCCCATC AGAAGCAGGC CAGTGGACTT CTAGCCTTCC
  Y
  TTCTATGACA GCACTTTCCT TCACACCCTT CAGAGTTATT TTTTACACTG CGGTGGCTTT
  TTACAGGTCT CTTTCACCGC CTTCTCACCT CCATCTTCCT TAGTCTCATC TCCATGGCTC
  CCAGAATGGA CAATCTATCT GCTGAACAGA GGCGTCTCAT CCTCCTTCTA GTCTTTGGGG
  ACCCACCTGG GCCACACCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37393732	NES08751678	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27191313					SNP	T	T	T	T	T	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37393732	NES08751678	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34851054 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11563	CpG island 11563			317 bp proximal
Gm46733	predicted gene, 46733			1637 bp upstream
Gm52552	predicted gene, 52552			within coordinates
Gm74854	predicted gene, 74854			1940 bp downstream
Rr396907	regulatory region 396907			1922 bp upstream
Rr555567	regulatory region 555567			1971 bp distal
Rr555568	regulatory region 555568			within coordinates
Rr555569	regulatory region 555569			483 bp proximal
Rr555570	regulatory region 555570			533 bp proximal
Rr555571	regulatory region 555571			1304 bp proximal
Traf1	TNF receptor-associated factor 1			Intron
				Noncoding-Transcript-Variant
Tssr17440	transcription start site region 17440			14 bp downstream
Tssr17441	transcription start site region 17441			359 bp upstream
Tssr17442	transcription start site region 17442			641 bp upstream
Tssr17443	transcription start site region 17443			660 bp upstream
Tssr17444	transcription start site region 17444			677 bp upstream
Tssr17445	transcription start site region 17445			842 bp upstream
Tssr23673	transcription start site region 23673			513 bp downstream
Tssr23674	transcription start site region 23674			709 bp downstream
Tssr23675	transcription start site region 23675			747 bp downstream
Tssr23676	transcription start site region 23676			760 bp downstream
Tssr23677	transcription start site region 23677			778 bp downstream
Tssr23678	transcription start site region 23678			911 bp downstream
Tssr23679	transcription start site region 23679			1885 bp downstream
Tssr23680	transcription start site region 23680			1939 bp downstream