rs27191315 SNP Detail

Summary

• ID
  rs27191315
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:34850939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTACTCTAT AGCCCAGGGG
  TCCAAGGCAC AGATAAATTG AGTGACTTGC TCAAGACCTT AAAGCTAGAG AGGCAGGAAG
  GACTGAGACC AGACCTGTGC TTTAAAATGA GCTTGGCAAT TATCCCAAAT TCTTCTCCCA
  TATCCACTCT CTCTTCTCAC ACTGCAATAC AAAGTTTAAA GAAGATTGTC AGCACAGCTG
  Y
  TGAAACTCCA GGGAATCTAC TCAGCCCTGT CATAAGCCCA CACACTGTCA AATGCTCCGG
  GCCTGCCCTA ATTTCAGTCC CATCAGAAGC AGGCCAGTGG ACTTCTAGCC TTCCTTTCTA
  TGACAGCACT TTCCTTCACA CCCTTCAGAG TTATTTTTTA CACTGCGGTG GCTTTTTACA
  GGTCTCTTTC ACCGCCTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37393734	NES08751674	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27191315					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37393734	NES08751674	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34850939 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11563	CpG island 11563			432 bp proximal
Gm46733	predicted gene, 46733			1752 bp upstream
Gm52552	predicted gene, 52552			within coordinates
Rr555567	regulatory region 555567			1856 bp distal
Rr555568	regulatory region 555568			within coordinates
Rr555569	regulatory region 555569			598 bp proximal
Rr555570	regulatory region 555570			648 bp proximal
Rr555571	regulatory region 555571			1419 bp proximal
Traf1	TNF receptor-associated factor 1			Intron
				Noncoding-Transcript-Variant
Tssr17440	transcription start site region 17440			75 bp upstream
Tssr17441	transcription start site region 17441			474 bp upstream
Tssr17442	transcription start site region 17442			756 bp upstream
Tssr17443	transcription start site region 17443			775 bp upstream
Tssr17444	transcription start site region 17444			792 bp upstream
Tssr17445	transcription start site region 17445			957 bp upstream
Tssr23673	transcription start site region 23673			628 bp downstream
Tssr23674	transcription start site region 23674			824 bp downstream
Tssr23675	transcription start site region 23675			862 bp downstream
Tssr23676	transcription start site region 23676			875 bp downstream
Tssr23677	transcription start site region 23677			893 bp downstream
Tssr23678	transcription start site region 23678			1026 bp downstream
Tssr23679	transcription start site region 23679			2000 bp downstream