rs27191317 SNP Detail

Summary

• ID
  rs27191317
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:34850561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTTAACT CCGTCCTCAG
  CCTGACCAGC AACCCCCTGC ACCCCACATG TCCTTTCCTT TTCCGACTGG GACACAAGGG
  AAGCACCCAA CCTTCTGGAT CCTTTTCTCT TGTCCTAGAC GGGCGCCCCC CCCCCCCCAC
  TCCAGCTCAT CTCCCAGCTC CTGCTACCAG CATTAGAATA CTCCCACACG GCTGTGGGCT
  R
  AGACAACAGG CACTGCTGCT CTGGTGCTAC CTGTAAAGTG GTTTGTTTTT CTCAGTACTG
  GGATCAGACC CAAGGCTGCG TACAAGTGCT TGCTAACCAA GCCACAGTTC CAGCCTCGTT
  TTAAGTACTT TAACAAACAT TTTGTCAATA TTTCCCTCCA GTCTTTGGAG ACCCTCCCCT
  ACTCTATAGC CCAGGGGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37393736	NES08751706	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27191317					SNP	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37393736	NES08751706	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34850561 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11563	CpG island 11563			810 bp proximal
Gm52552	predicted gene, 52552			within coordinates
Gm74856	predicted gene, 74856			1914 bp downstream
Rr555567	regulatory region 555567			1478 bp distal
Rr555568	regulatory region 555568			within coordinates
Rr555569	regulatory region 555569			976 bp proximal
Rr555570	regulatory region 555570			1026 bp proximal
Rr555571	regulatory region 555571			1797 bp proximal
Traf1	TNF receptor-associated factor 1			Intron
				Noncoding-Transcript-Variant
Tssr17439	transcription start site region 17439			1680 bp downstream
Tssr17440	transcription start site region 17440			453 bp upstream
Tssr17441	transcription start site region 17441			852 bp upstream
Tssr17442	transcription start site region 17442			1134 bp upstream
Tssr17443	transcription start site region 17443			1153 bp upstream
Tssr17444	transcription start site region 17444			1170 bp upstream
Tssr17445	transcription start site region 17445			1335 bp upstream
Tssr23671	transcription start site region 23671			1917 bp upstream
Tssr23672	transcription start site region 23672			1806 bp upstream
Tssr23673	transcription start site region 23673			1006 bp downstream
Tssr23674	transcription start site region 23674			1202 bp downstream
Tssr23675	transcription start site region 23675			1240 bp downstream
Tssr23676	transcription start site region 23676			1253 bp downstream
Tssr23677	transcription start site region 23677			1271 bp downstream
Tssr23678	transcription start site region 23678			1404 bp downstream