rs27191318 SNP Detail

Summary

• ID
  rs27191318
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:34850261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGATAATTTA TTCAGGTGAT
  GGTCACACCC TTCTTGTTTC TCACAATGAG AGATTTAAAA TGGCAAATGA CACTTACACA
  GTGTTTTGGC ATCTATCAGC TTCCTTGATT CTCCCAGGTG GTCAGGTCAA GTTAGACTCT
  GTTATGTCTC TAGATAGAGT CAATGGTCTA CCAAGCCTGG GGTGACACCA GGACATCTAG
  Y
  GGCCAAGAGG TTACTCCATC CTACAGACTT CCAACTGAAT CCTCCCCAGC CTGCTCAGCT
  AATGATCTCT CATCTCCTTG CCTGCTCTCA GAAAGGCATT CCCTTAACTC CGTCCTCAGC
  CTGACCAGCA ACCCCCTGCA CCCCACATGT CCTTTCCTTT TCCGACTGGG ACACAAGGGA
  AGCACCCAAC CTTCTGGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37393737	NES08751705	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27191318					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37393737	NES08751705	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34850261 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11563	CpG island 11563			1110 bp proximal
Gm52552	predicted gene, 52552			within coordinates
Gm74856	predicted gene, 74856			1614 bp downstream
Rr396906	regulatory region 396906			1865 bp downstream
Rr555565	regulatory region 555565			1952 bp distal
Rr555566	regulatory region 555566			1770 bp distal
Rr555567	regulatory region 555567			1178 bp distal
Rr555568	regulatory region 555568			245 bp proximal
Rr555569	regulatory region 555569			1276 bp proximal
Rr555570	regulatory region 555570			1326 bp proximal
Traf1	TNF receptor-associated factor 1			Intron
				Noncoding-Transcript-Variant
Tssr476	transcription start site region 476			1932 bp downstream
Tssr17437	transcription start site region 17437			1914 bp downstream
Tssr17438	transcription start site region 17438			1894 bp downstream
Tssr17439	transcription start site region 17439			1380 bp downstream
Tssr17440	transcription start site region 17440			753 bp upstream
Tssr17441	transcription start site region 17441			1152 bp upstream
Tssr17442	transcription start site region 17442			1434 bp upstream
Tssr17443	transcription start site region 17443			1453 bp upstream
Tssr17444	transcription start site region 17444			1470 bp upstream
Tssr17445	transcription start site region 17445			1635 bp upstream
Tssr23671	transcription start site region 23671			1617 bp upstream
Tssr23672	transcription start site region 23672			1506 bp upstream
Tssr23673	transcription start site region 23673			1306 bp downstream
Tssr23674	transcription start site region 23674			1502 bp downstream
Tssr23675	transcription start site region 23675			1540 bp downstream
Tssr23676	transcription start site region 23676			1553 bp downstream
Tssr23677	transcription start site region 23677			1571 bp downstream
Tssr23678	transcription start site region 23678			1704 bp downstream